Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs396991
rs396991
0.010 GeneticVariation BEFREE We genotyped FcγRIIIa-158V/F (rs396991) using a pyro-sequencing assay (PSQ 96MA) in a total of 732 individuals with SLE (390 lupus nephritis and 342 non-lupus nephritis) and 886 controls. 24131500

2013

dbSNP: rs11981433
rs11981433
0.010 GeneticVariation BEFREE We found no association of PON2 SNPs with SLE risk but modest associations were observed with lupus nephritis (rs11981433, rs17876205, rs17876183) and immunologic disorder (rs11981433) in SLE patients (P = 0.013 to 0.042). 21223581

2011

dbSNP: rs114580964
rs114580964
0.010 GeneticVariation BEFREE We discovered five independent risk variants for LN within the MHC region, including <i>HLA-DRβ1</i> amino acid 11 (<i>P</i><sub>omnibus</sub><0.001), <i>HLA-DQβ1</i> amino acid 45 (<i>P</i><0.001; odds ratio, 0.58; 95% confidence interval, 0.52 to 0.65), <i>HLA-A</i> amino acid 156 (<i>P</i><sub>omnibus</sub><0.001), <i>HLA-DPβ1</i> amino acid 76 (<i>P</i><sub>omnibus</sub><0.001), and a missense variant in <i>PRRC2A</i> (rs114580964; <i>P</i><0.001; odds ratio, 0.38; 95% confidence interval, 0.30 to 0.49) at genome-wide significance. 28754791

2017

dbSNP: rs3746444
rs3746444
0.010 GeneticVariation BEFREE This is the first report documenting that the <i>miR-146a</i> rs2910164G/C and <i>miR-499</i> rs3746444 polymorphisms are associated with SLE susceptibility but not with LN. 29190882

2017

dbSNP: rs2910164
rs2910164
0.020 GeneticVariation BEFREE This is the first report documenting that the <i>miR-146a</i> rs2910164G/C and <i>miR-499</i> rs3746444 polymorphisms are associated with SLE susceptibility but not with LN. 29190882

2017

dbSNP: rs172378
rs172378
0.010 GeneticVariation BEFREE These results support the implication of the G allele in rs172378 as a risk factor for lupus nephritis in a homozygous status, at least for a Bulgarian population. 25326229

2015

dbSNP: rs1061170
rs1061170
CFH
0.010 GeneticVariation BEFREE There was a significantly higher ratio of CC/CT genotypes of rs1061170 in lupus nephritis patients with class III than in the other two classes (class III vs. class IV vs. class V: 21.0% vs. 9.7% vs. 9.4%; P = .044). 28403670

2017

dbSNP: rs1267969615
rs1267969615
ACE
0.010 GeneticVariation BEFREE There was no association between genetic polymorphism of ACE, AGT M235T and AGTR1 A1166C and susceptibility to lupus nephritis, nor histological activity and chronicity indices in renal biopsy among the patients studied. 16047641

2005

dbSNP: rs699
rs699
AGT
0.010 GeneticVariation BEFREE There was no association between genetic polymorphism of ACE, AGT M235T and AGTR1 A1166C and susceptibility to lupus nephritis, nor histological activity and chronicity indices in renal biopsy among the patients studied. 16047641

2005

dbSNP: rs8091180
rs8091180
0.010 GeneticVariation BEFREE The SNP rs8091180 in NFATC1 was associated with LN (OR 1.43, p = 3.3E-04) in the candidate SNP meta-analysis with the highest OR among African-Americans (OR 2.17, p = 0.0035). 29953444

2018

dbSNP: rs800292
rs800292
CFH
0.010 GeneticVariation BEFREE The rs6677604-GG genotype was observed to be associated with the absence of anti-ds DNA antibody ( P = .021), and the rs800292-TT genotype was associated with a higher level of circulating C3 ( P = 0.20) in lupus nephritis. 28403670

2017

dbSNP: rs2004640
rs2004640
0.010 GeneticVariation BEFREE The results suggested that the rs2004640 T allele was associated with susceptibility to lupus nephritis and that the IRF5 polymorphism analyzed did not seem to be implicated in the pathology and clinical manifestation of lupus nephritis in the Chinese population. 21040166

2010

dbSNP: rs28940579
rs28940579
0.010 GeneticVariation BEFREE The prevalence of four MEFV gene mutations (M694V, M680I, V726A and E148Q) was investigated in 114 SLE patients and effect on disease severity was analyzed in patients with biopsy-proven SLE nephritis. 25413357

2015

dbSNP: rs2910164
rs2910164
0.020 GeneticVariation BEFREE The objective of this study was to identify the association between genotypes of miR-146a rs2910164 and expression of TRAF6 as well as the risk of lupus nephritis (LN). 29754557

2017

dbSNP: rs10127939
rs10127939
0.010 GeneticVariation BEFREE The low-binding haplotypes formed by 66L/R/H and 176F confer enhanced risk of lupus nephritis in African Americans. 24782186

2014

dbSNP: rs8193037
rs8193037
0.010 GeneticVariation BEFREE The aim of this study was to investigate whether the IL-17A -737 T/C (rs8193036), -444A/G (rs3819024), -197G/A (rs2275913), and -121G/A (rs8193037) SNPs conferred susceptibility to SLE (or lupus nephritis) or to RA in a Mexican population. 30398030

2019

dbSNP: rs292001
rs292001
0.010 GeneticVariation BEFREE The A allele and AA genotype of C1q rs292001 can be considered a susceptibility risk factor and the GG genotype could be considered protective for jSLE and LN in the studied cohort of Egyptian children. 26095468

2015

dbSNP: rs6677604
rs6677604
CFH
0.010 GeneticVariation BEFREE The rs6677604-GG genotype was observed to be associated with the absence of anti-ds DNA antibody ( P = .021), and the rs800292-TT genotype was associated with a higher level of circulating C3 ( P = 0.20) in lupus nephritis. 28403670

2017

dbSNP: rs2295415
rs2295415
0.010 GeneticVariation BEFREE SNP rs2295415 appears to confer higher risk to develop anti-Sm antibodies-positive SLE and may play a protective role against lupus nephritis. 26601115

2015

dbSNP: rs11057864
rs11057864
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs1108131
rs1108131
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs6697139
rs6697139
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs7692514
rs7692514
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs958476
rs958476
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs3792192
rs3792192
0.010 GeneticVariation BEFREE PLA2R1 displayed a nominally significantly genetic association with SLE [for rs4664308, P = 0.02, odds ratio (OR) 1.16, 95 % confidence interval (CI) 1.02-1.31; for rs3792192, P = 7.9 × 10(-3), OR 1.18, 95 % CI 1.05-1.34] and LN (for rs4664308, P = 0.04). 26645973

2016